Marcus W. Fedarko
Hi! I'm a grad student in computer science at the
University of California, San Diego
working in the
Pevzner Lab.
My research focuses on developing methods for the analysis and
visualization of microbiome sequencing data.
Before grad school I was an undergraduate student at the
University of Maryland, where I worked
in the
Pop Lab.
I can be reached via email at
mfedarko (at) ucsd (dot) edu.
Research projects
(This is not an exhaustive list; there are a few other things in the
oven.)
-
MetagenomeScope
Visualization tool for (meta)genomic assembly graphs.
Code Status: in development
-
Qurro
Visualization tool for log-ratios of compositional data.
Code Status: maintenance
-
EMPress
Visualization tool for (phylogenetic) trees and associated
data.
Code Status: maintenance
-
strainFlye
Pipeline for the analysis of (rare) mutations in
metagenomes.
Code Status: maintenance
Some other projects
Miscellany